INFO:root:Objective is 4x so voxel sizes are x = 1.835, y = 1.835, and z = 2.0
INFO:root:most informative channel is Ex_488_Em_525
INFO:root:2021-10-26 07:27:44.816709 ... stitching started
INFO:root:Run on computer: 3D-Workstation
INFO:root:Total physical memory: 511 GB
INFO:root:Physical CPU core count: 12
INFO:root:Logical CPU core count: 24
INFO:root:Source folder path:
F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed
INFO:root:Destriped or tif files path:
D:20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_flat_applied_8b_3bsh
INFO:root:Stitched folder path:
F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_stitched_v4
INFO:root:2021-10-26 07:27:44.819697: Ex_488_Em_525: creating a new flat image.
INFO:root:
Background dark level is 120 for Ex_488_Em_525 channel.
INFO:root:
2021-10-26 07:43:26.207215: Ex_488_Em_525: DeStripe program started.
INFO:root:2021-10-26 08:47:59.322337: Ex_488_Em_525: DeStripe program is done.
INFO:root:2021-10-26 08:47:59.323333: Ex_561_Em_600: creating a new flat image.
INFO:root:
Background dark level is 117 for Ex_561_Em_600 channel.
INFO:root:
2021-10-26 09:02:47.413808: Ex_561_Em_600: DeStripe program started.
INFO:root:2021-10-26 09:59:00.214909: Ex_561_Em_600: DeStripe program is done.
INFO:root:2021-10-26 09:59:00.215904: Ex_642_Em_680: creating a new flat image.
INFO:root:
Background dark level is 114 for Ex_642_Em_680 channel.
INFO:root:
2021-10-26 10:12:39.125163: Ex_642_Em_680: DeStripe program started.
INFO:root:2021-10-26 21:42:04.897014: Ex_642_Em_680: DeStripe program is done.
INFO:root:2021-10-26 21:42:04.898010: stitching to 3D TIFF started ...
INFO:root:2021-10-26 21:42:04.899005: D:20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_flat_applied_8b_3bsh\Ex_488_Em_525 folder exists importing for stitching...
INFO:root:import command:
TeraStitcher_windows_avx512\terastitcher.exe -1 --ref1=H --ref2=V --ref3=D --vxl1=1.835 --vxl2=1.835 --vxl3=2.0 --sparse_data --volin=D:20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_flat_applied_8b_3bsh\Ex_488_Em_525 --projout=F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_stitched_v4\Ex_488_Em_525_xml_import_step_1.xml --noprogressbar
INFO:root:2021-10-26 21:42:06.755829: starting step 2 of stitching for most informative channel ...
INFO:root:stitching command:
mpiexec -np 24 python -m mpi4py TeraStitcher_windows_avx512\pyscripts\Parastitcher.py -2 --threshold=0.7 --projin=F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_stitched_v4\Ex_488_Em_525_xml_import_step_1.xml --projout=F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_stitched_v4\Ex_488_Em_525_xml_import_step_2.xml
2021-10-27 17:44:26	21476	19360	INFO	Starting ImarisConvert with arguments: imaris\ImarisConvertiv.exe --input F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_stitched_v4\tif\093740_094900_000460.tif --output F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_stitched_v4\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed.ims --log F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed\log.txt --inputformat TiffSeries --nthreads 24 --compression 1 --defaultcolorlist #BBRRGG
2021-10-27 17:44:27	21476	19360	INFO	Converting "F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_stitched_v4\tif\093740_094900_000460.tif" into "F:\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed_stitched_v4\20211001_09_50_54_SW210318_07_LS_4X_2000z_Compressed.ims"