{
  "version": "1.0",
  "normalized": false,
  "dataset_id": "local_dataset",
  "name": "combined_output",
  "type": "merscope",
  "genes": [
    "TNFRSF17",
    "CA12",
    "PCSK1N",
    "SLC17A7",
    "GALNT18",
    "SYT10",
    "ISL1",
    "ABCG2",
    "TSHZ3",
    "NPY",
    "LAMP5",
    "CCR7",
    "CNGB1",
    "CHRM3",
    "NTS",
    "NOTCH2",
    "ANO3",
    "EMP1",
    "PDGFRA",
    "RCBTB1",
    "ACSBG1",
    "RNF144B",
    "FGFBP2",
    "ARHGAP29",
    "IRAK3",
    "HS3ST2",
    "PROX1",
    "MAN2A1",
    "CYBA",
    "WLS",
    "SIM1",
    "SLC17A6",
    "PALMD",
    "CD44",
    "GRB14",
    "ARHGAP31",
    "NDST4",
    "COL5A3",
    "SEL1L3",
    "RASGRF2",
    "HUNK",
    "SLC47A1",
    "PTH2R",
    "GLRA3",
    "HAPLN1",
    "SLC22A3",
    "CRH",
    "LYPD6B",
    "FREM2",
    "ZNF385D",
    "KCNK13",
    "GRM1",
    "ADAMTS18",
    "STK32B",
    "UBASH3B",
    "CA2",
    "PREX2",
    "LMX1A",
    "TAFA4",
    "CTLA4",
    "PRSS12",
    "ADGRG6",
    "NEUROD6",
    "CD3D",
    "CALB2",
    "KCNS3",
    "FGF13",
    "FSTL5",
    "CMTM8",
    "RXFP1",
    "HEG1",
    "FCHSD2",
    "OSBPL3",
    "SERTM1",
    "SEMA6D",
    "L3MBTL4",
    "TAC1",
    "COL9A1",
    "EDNRA",
    "SOX2",
    "CHRNA3",
    "NPR3",
    "OAF",
    "MARCKSL1",
    "FBXL7",
    "MT1E",
    "HS3ST4",
    "CPNE8",
    "PLCH1",
    "OTX2",
    "TSPAN18",
    "FAM163A",
    "VCAN",
    "GATA3",
    "TBL1Y",
    "MYL9",
    "PAX8",
    "TH",
    "PKIB",
    "EYA4",
    "NEK5",
    "SMOC2",
    "RSPO3",
    "TLL2",
    "CNTNAP3",
    "TMC2",
    "PDE3A",
    "GULP1",
    "FCER2",
    "NRP2",
    "SPATS2L",
    "RGS22",
    "TOX",
    "ST6GAL2",
    "OPN3",
    "KMO",
    "PDE10A",
    "VIP",
    "CFH",
    "BRINP3",
    "RGS4",
    "MOXD1",
    "PTPRK",
    "TCERG1L",
    "NR2E1",
    "TCF7L2",
    "CD2",
    "CNR1",
    "TSPAN2",
    "SORCS3",
    "NTNG1",
    "GPC4",
    "KANK4",
    "RAB3B",
    "NACC2",
    "IL1RAPL2",
    "BEX1",
    "GRIK3",
    "PCDH11X",
    "GLP1R",
    "LHX6",
    "SVEP1",
    "FAM155A",
    "FOXP3",
    "MOG",
    "GPC6",
    "GPC5",
    "TRPM3",
    "KCTD12",
    "KLF12",
    "ADCY8",
    "ITGA8",
    "LHFPL6",
    "TRPC3",
    "SFRP1",
    "LINGO2",
    "ELAVL2",
    "ARHGAP6",
    "SMOC1",
    "ADARB2",
    "SGCZ",
    "LGI2",
    "DOCK8",
    "SEMA5A",
    "AQP4",
    "GRIK1",
    "TRDC",
    "IGHA1",
    "PID1",
    "CALCRL",
    "PDGFD",
    "PTPRZ1",
    "FOXP2",
    "DRD1",
    "PPP1R1B",
    "FAT4",
    "CAMK2D",
    "ARHGAP24",
    "SLC27A6",
    "PDE1C",
    "LYPD1",
    "MEIS2",
    "EPHB1",
    "LOXHD1",
    "PTCHD4",
    "DSCAM",
    "PRKG1",
    "RAB37",
    "RGS6",
    "HPSE2",
    "ETV1",
    "CCDC85A",
    "ZFPM2",
    "DPP10",
    "IL1R1",
    "DCC",
    "PRKCA",
    "SATB2",
    "MPPED1",
    "XIST",
    "ELFN1",
    "COL12A1",
    "ENPP2",
    "PTPRU",
    "MIR3659HG",
    "RELN",
    "HRH1",
    "CTNNA3",
    "NEFM",
    "TMEM132C",
    "PDE1A",
    "GDA",
    "CASC6",
    "NPAS1",
    "FRMPD3",
    "FAT1",
    "LRP2",
    "CHRM2",
    "PTPN3",
    "CLMP",
    "DCDC2C",
    "FAM189A2",
    "SULF1",
    "TAC3",
    "XACT",
    "CST7",
    "ANTXR2",
    "SULF2",
    "PPP1R1C",
    "MEIS1",
    "KCNT2",
    "TUNAR",
    "LEF1",
    "NPNT",
    "NPFFR2",
    "SH3RF2",
    "EPHA5",
    "PITX2",
    "PCDH7",
    "CXCL14",
    "MEF2C-AS1",
    "ANGPT1",
    "GFRA2",
    "SCIN",
    "ADAM28",
    "LINC01608",
    "LPL",
    "TESPA1",
    "MAML2",
    "SLC22A10",
    "MS4A1",
    "CACNG5",
    "OTX2-AS1",
    "CEP112",
    "PLD5",
    "BACH2",
    "KLF5",
    "PDZRN4",
    "NNMT",
    "NFIB",
    "DRD2",
    "NRG3",
    "ROR1",
    "MPDZ",
    "LINC00609",
    "KCNC2",
    "ADAMTS20",
    "MGAT4C",
    "MEIS3",
    "CTXND1",
    "ONECUT1",
    "FBN1",
    "MT1X",
    "PECAM1",
    "ADCYAP1",
    "LAMA3",
    "FRK",
    "TARID",
    "CORIN",
    "TRAC",
    "ADORA2A",
    "CNTNAP4",
    "CCL4",
    "LHX1",
    "PTPRQ",
    "KCNIP1",
    "TMEM200A",
    "CLDN5",
    "NR2F2-AS1",
    "CNTN5",
    "CDH23",
    "SLC35F1",
    "EBF1",
    "NKAIN3",
    "TSHZ2",
    "ANGPT2",
    "RMST",
    "ADGRV1",
    "LINC02822",
    "PTCHD1-AS",
    "Blank-1",
    "Blank-2",
    "Blank-3",
    "Blank-4",
    "Blank-5",
    "Blank-6",
    "Blank-7",
    "Blank-8",
    "Blank-9",
    "Blank-10",
    "Blank-11",
    "Blank-12",
    "Blank-13",
    "Blank-14",
    "Blank-15"
  ],
  "statistics": {
    "total_cells": 240954,
    "total_genes": 315,
    "spatial_dimensions": 2,
    "available_embeddings": [],
    "cluster_count": 11
  },
  "processing": {
    "spatial_scaling_factor": 1.0,
    "chunk_size": 1,
    "num_chunks": 315,
    "created_by": "process_spatial_data.py"
  },
  "files": {
    "coordinates": [
      "spatial"
    ],
    "expression_chunks": 315,
    "observation_columns": [
      "fov",
      "DAPI_high_pass",
      "min_x",
      "Aux3_high_pass",
      "volume",
      "max_x",
      "solidity",
      "Aux2_high_pass",
      "_sample_id",
      "Aux3_raw",
      "DAPI_raw",
      "Aux2_raw",
      "_source_file",
      "anisotropy",
      "perimeter_area_ratio",
      "max_y",
      "supercluster_name",
      "min_y",
      "supercluster_label",
      "transcript_count",
      "Aux1_raw",
      "Aux1_high_pass",
      "PolyT_high_pass",
      "cluster_label",
      "cluster_name",
      "subcluster_name",
      "subcluster_label",
      "PolyT_raw",
      "supercluster_bootstrapping_probability",
      "subcluster_bootstrapping_probability",
      "subcluster_alias",
      "cluster_bootstrapping_probability"
    ],
    "de_stats": [
      "fov",
      "_sample_id",
      "_source_file",
      "supercluster_name",
      "supercluster_label",
      "transcript_count",
      "cluster_label",
      "cluster_name",
      "subcluster_name",
      "subcluster_label",
      "subcluster_alias"
    ]
  }
}